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Sample GSM1573084 Query DataSets for GSM1573084
Status Public on Jun 03, 2015
Title Frontal of subject 239 (Sample244)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 239
Sex: F
predicted gender: female
age: 100
dna methylation age: 82.6990302197903
age acceleration with respect to noncerebellar samples: 6.59257641446814
cor sample vs gold standard: 0.887910995019696
mean abs difference sample vs gold standard: 0.0857220286396653
postmortem interval: 26
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5711925
cg00000108 0.8953747
cg00000109 0.71369
cg00000165 0.2149083
cg00000236 0.8326424
cg00000289 0.4618083
cg00000292 0.707217
cg00000321 0.5590519
cg00000363 0.1394478
cg00000622 0.01507896
cg00000658 0.8151248
cg00000714 0.1336004
cg00000721 0.8814375
cg00000734 0.05871129
cg00000769 0.03252879
cg00000807 0.9059008
cg00000884 0.7747226
cg00000905 0.07747789
cg00000924 0.6735939
cg00000948 0.8942792

Total number of rows: 485577

Table truncated, full table size 10036 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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