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Sample GSM1573080 Query DataSets for GSM1573080
Status Public on Jun 03, 2015
Title Sensory Cortex of subject 513 (Sample240)
Sample type genomic
 
Source name Brain Sensory Cortex
Organism Homo sapiens
Characteristics tissue: Brain Sensory Cortex
subject id: 513
Sex: M
predicted gender: male
age: 41
dna methylation age: 31.525191712112
age acceleration with respect to noncerebellar samples: -5.90598096748618
cor sample vs gold standard: 0.891423502309134
mean abs difference sample vs gold standard: 0.0839578399246424
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4427711
cg00000108 0.8926572
cg00000109 0.7116442
cg00000165 0.1795267
cg00000236 0.7697947
cg00000289 0.3763499
cg00000292 0.7641624
cg00000321 0.5469604
cg00000363 0.1337316
cg00000622 0.02696872
cg00000658 0.7659083
cg00000714 0.124528
cg00000721 0.8876845
cg00000734 0.06394819
cg00000769 0.03566964
cg00000807 0.9007853
cg00000884 0.6873176
cg00000905 0.08351579
cg00000924 0.6493582
cg00000948 0.9182527

Total number of rows: 485577

Table truncated, full table size 10030 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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