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Sample GSM1573076 Query DataSets for GSM1573076
Status Public on Jun 03, 2015
Title Motor Cortex of subject 393 (Sample236)
Sample type genomic
 
Source name Brain Motor Cortex
Organism Homo sapiens
Characteristics tissue: Brain Motor Cortex
subject id: 393
Sex: M
predicted gender: male
age: 73
dna methylation age: 48.7691629303597
age acceleration with respect to noncerebellar samples: -9.6384334106481
cor sample vs gold standard: 0.887518368372653
mean abs difference sample vs gold standard: 0.0898755462128616
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4590643
cg00000108 0.9207988
cg00000109 0.7004449
cg00000165 0.1941508
cg00000236 0.8104488
cg00000289 0.4689687
cg00000292 0.7224917
cg00000321 0.5065348
cg00000363 0.1484202
cg00000622 0.03203908
cg00000658 0.8050893
cg00000714 0.08948719
cg00000721 0.8903382
cg00000734 0.07736196
cg00000769 0.05825941
cg00000807 0.9036695
cg00000884 0.8091899
cg00000905 0.1136879
cg00000924 0.6446129
cg00000948 0.9122613

Total number of rows: 485577

Table truncated, full table size 10022 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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