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Sample GSM1573074 Query DataSets for GSM1573074
Status Public on Jun 03, 2015
Title Sensory Cortex of subject 315 (Sample234)
Sample type genomic
Source name Brain Sensory Cortex
Organism Homo sapiens
Characteristics tissue: Brain Sensory Cortex
subject id: 315
Sex: F
predicted gender: female
age: 63
dna methylation age: 46.511080723643
age acceleration with respect to noncerebellar samples: -5.3413832231743
cor sample vs gold standard: 0.884677795156549
mean abs difference sample vs gold standard: 0.0851480531932548
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4889109
cg00000108 0.8523586
cg00000109 0.6847659
cg00000165 0.1883589
cg00000236 0.8296956
cg00000289 0.5230554
cg00000292 0.6558714
cg00000321 0.4778908
cg00000363 0.1563107
cg00000622 0.02512967
cg00000658 0.8074653
cg00000714 0.1060197
cg00000721 0.8543143
cg00000734 0.0548427
cg00000769 0.04299984
cg00000807 0.9123485
cg00000884 0.7464651
cg00000905 0.1069652
cg00000924 0.5924655
cg00000948 0.9029869

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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