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Sample GSM1573066 Query DataSets for GSM1573066
Status Public on Jun 03, 2015
Title CRBM of subject 379 (Sample226)
Sample type genomic
 
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 379
Sex: F
predicted gender: female
age: 96
dna methylation age: 62.2763781852123
age acceleration with respect to noncerebellar samples: -11.2080226624337
cor sample vs gold standard: 0.824372917929671
mean abs difference sample vs gold standard: 0.100349849148976
postmortem interval: NA
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.5344777
cg00000108 0.4602869
cg00000109 0.8123744
cg00000165 0.3894624
cg00000236 0.6591813
cg00000289 0.4066475
cg00000292 0.5921554
cg00000321 0.1723215
cg00000363 0.0954723
cg00000622 0.0296079
cg00000658 0.7947972
cg00000714 0.05656498
cg00000721 0.9127082
cg00000734 0.05543307
cg00000769 0.02825849
cg00000807 0.8517914
cg00000884 0.7930094
cg00000905 0.06305123
cg00000924 0.6247631
cg00000948 0.8825742

Total number of rows: 485577

Table truncated, full table size 10064 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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