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Sample GSM1573065 Query DataSets for GSM1573065
Status Public on Jun 03, 2015
Title CRBM of subject 502 (Sample225)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 502
Sex: F
predicted gender: female
age: 85
dna methylation age: 58.95144598618
age acceleration with respect to noncerebellar samples: -7.32230922785642
cor sample vs gold standard: 0.823925582200853
mean abs difference sample vs gold standard: 0.100142810983671
postmortem interval: 22
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5349544
cg00000108 0.313452
cg00000109 0.7248851
cg00000165 0.1445455
cg00000236 0.6158161
cg00000289 0.2938865
cg00000292 0.6394455
cg00000321 0.191814
cg00000363 0.08234036
cg00000622 0.01857115
cg00000658 0.7639344
cg00000714 0.05077643
cg00000721 0.8830994
cg00000734 0.05171619
cg00000769 0.03239038
cg00000807 0.8777332
cg00000884 0.7135393
cg00000905 0.08146301
cg00000924 0.5674733
cg00000948 0.9088261

Total number of rows: 485577

Table truncated, full table size 10066 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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