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Sample GSM1573064 Query DataSets for GSM1573064
Status Public on Jun 03, 2015
Title Frontal of subject 57 (Sample224)
Sample type genomic
 
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 57
Sex: F
predicted gender: female
age: 58
dna methylation age: 52.950946708627
age acceleration with respect to noncerebellar samples: 4.37604895890496
cor sample vs gold standard: 0.915976004864639
mean abs difference sample vs gold standard: 0.0762677425746732
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.3384015
cg00000108 0.7488475
cg00000109 0.7751382
cg00000165 0.160113
cg00000236 0.7176471
cg00000289 0.556316
cg00000292 0.5785592
cg00000321 0.3118531
cg00000363 0.2221779
cg00000622 0.02379052
cg00000658 0.8284093
cg00000714 0.1097999
cg00000721 0.8731889
cg00000734 0.0573499
cg00000769 0.04963248
cg00000807 0.8386348
cg00000884 0.7716956
cg00000905 0.07791382
cg00000924 0.6443201
cg00000948 0.865191

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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