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Sample GSM1573055 Query DataSets for GSM1573055
Status Public on Jun 03, 2015
Title CRBM of subject 107 (Sample215)
Sample type genomic
 
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 107
Sex: F
predicted gender: female
age: 114
dna methylation age: 60.546424857283
age acceleration with respect to noncerebellar samples: -24.7372142999059
cor sample vs gold standard: 0.829850427871776
mean abs difference sample vs gold standard: 0.098745858652718
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.5959551
cg00000108 0.4635537
cg00000109 0.7391496
cg00000165 0.2724646
cg00000236 0.7336599
cg00000289 0.3496481
cg00000292 0.587583
cg00000321 0.226694
cg00000363 0.07729332
cg00000622 0.01369165
cg00000658 0.8291822
cg00000714 0.05871819
cg00000721 0.8613183
cg00000734 0.0548503
cg00000769 0.02457394
cg00000807 0.9066387
cg00000884 0.7723022
cg00000905 0.08768945
cg00000924 0.6484567
cg00000948 0.8889462

Total number of rows: 485577

Table truncated, full table size 10054 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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