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Sample GSM1573054 Query DataSets for GSM1573054
Status Public on Jun 03, 2015
Title Occipital of subject 351 (Sample214)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 351
Sex: M
predicted gender: male
age: 82
dna methylation age: 53.051673121546
age acceleration with respect to noncerebellar samples: -11.2555423742332
cor sample vs gold standard: 0.889713912806661
mean abs difference sample vs gold standard: 0.0866419417392417
postmortem interval: 17
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4340879
cg00000108 0.8925728
cg00000109 0.66221
cg00000165 0.1623197
cg00000236 0.7154762
cg00000289 0.359
cg00000292 0.6661304
cg00000321 0.4673804
cg00000363 0.1398642
cg00000622 0.02913615
cg00000658 0.8292581
cg00000714 0.1225435
cg00000721 0.8470834
cg00000734 0.06587996
cg00000769 0.03771582
cg00000807 0.8916336
cg00000884 0.7479489
cg00000905 0.1245421
cg00000924 0.6594546
cg00000948 0.904998

Total number of rows: 485577

Table truncated, full table size 10023 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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