GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1573053 Query DataSets for GSM1573053
Status Public on Jun 03, 2015
Title Temporal of subject 107 (Sample213)
Sample type genomic
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 107
Sex: F
predicted gender: female
age: 114
dna methylation age: 79.2408372744462
age acceleration with respect to noncerebellar samples: -6.04280188274267
cor sample vs gold standard: 0.911912730601641
mean abs difference sample vs gold standard: 0.078507104011873
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3589744
cg00000108 0.8256837
cg00000109 0.7142091
cg00000165 0.1953855
cg00000236 0.7546228
cg00000289 0.4500349
cg00000292 0.6110964
cg00000321 0.4347085
cg00000363 0.1558489
cg00000622 0.02197945
cg00000658 0.8288857
cg00000714 0.09155132
cg00000721 0.8641587
cg00000734 0.06614163
cg00000769 0.0390925
cg00000807 0.8522086
cg00000884 0.7895724
cg00000905 0.08793774
cg00000924 0.6271904
cg00000948 0.8807184

Total number of rows: 485577

Table truncated, full table size 10027 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap