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Sample GSM1573045 Query DataSets for GSM1573045
Status Public on Jun 03, 2015
Title Temporal of subject 25 (Sample205)
Sample type genomic
 
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 25
Sex: F
predicted gender: female
age: 59
dna methylation age: 41.9554135454439
age acceleration with respect to noncerebellar samples: -7.27499744369719
cor sample vs gold standard: 0.894498841031496
mean abs difference sample vs gold standard: 0.0829049788690266
postmortem interval: 10
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.390555
cg00000108 0.8691999
cg00000109 0.6608779
cg00000165 0.1642994
cg00000236 0.7989454
cg00000289 0.4763827
cg00000292 0.684952
cg00000321 0.4414878
cg00000363 0.1547785
cg00000622 0.03271325
cg00000658 0.8073642
cg00000714 0.07464486
cg00000721 0.8583941
cg00000734 0.05652715
cg00000769 0.03300539
cg00000807 0.8721027
cg00000884 0.7635627
cg00000905 0.07404922
cg00000924 0.6469989
cg00000948 0.8748924

Total number of rows: 485577

Table truncated, full table size 10029 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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