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Sample GSM1573044 Query DataSets for GSM1573044
Status Public on Jun 03, 2015
Title Occipital of subject 194 (Sample204)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 194
Sex: F
predicted gender: female
age: 81
dna methylation age: 62.2733231698382
age acceleration with respect to noncerebellar samples: -1.378379086522
cor sample vs gold standard: 0.890340034172792
mean abs difference sample vs gold standard: 0.0845458321299846
postmortem interval: 23
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4070423
cg00000108 0.9230769
cg00000109 0.7146341
cg00000165 0.1836327
cg00000236 0.7961602
cg00000289 0.4266344
cg00000292 0.6214969
cg00000321 0.5709909
cg00000363 0.121012
cg00000622 0.02468921
cg00000658 0.8296006
cg00000714 0.108895
cg00000721 0.8909679
cg00000734 0.06041766
cg00000769 0.0240422
cg00000807 0.9011843
cg00000884 0.7910448
cg00000905 0.0654088
cg00000924 0.6277456
cg00000948 0.9151645

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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