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Sample GSM1573036 Query DataSets for GSM1573036
Status Public on Jun 03, 2015
Title Temporal of subject 194 (Sample196)
Sample type genomic
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 194
Sex: F
predicted gender: female
age: 81
dna methylation age: 56.7991569929544
age acceleration with respect to noncerebellar samples: -6.8525452634058
cor sample vs gold standard: 0.909290513026814
mean abs difference sample vs gold standard: 0.0788083831735424
postmortem interval: 23
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.395766
cg00000108 0.8700284
cg00000109 0.6855519
cg00000165 0.164486
cg00000236 0.728632
cg00000289 0.3529412
cg00000292 0.6463765
cg00000321 0.464691
cg00000363 0.1611126
cg00000622 0.02181712
cg00000658 0.7920239
cg00000714 0.07816935
cg00000721 0.876753
cg00000734 0.05631709
cg00000769 0.03431293
cg00000807 0.9000667
cg00000884 0.693306
cg00000905 0.08295512
cg00000924 0.6100034
cg00000948 0.9070693

Total number of rows: 485577

Table truncated, full table size 10029 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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