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Sample GSM1573035 Query DataSets for GSM1573035
Status Public on Jun 03, 2015
Title CRBM of subject 34 (Sample195)
Sample type genomic
 
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 34
Sex: F
predicted gender: female
age: 63
dna methylation age: 47.9467059471868
age acceleration with respect to noncerebellar samples: -3.9057579996305
cor sample vs gold standard: 0.842051024505136
mean abs difference sample vs gold standard: 0.097812566139843
postmortem interval: 28
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.6354533
cg00000108 0.5195816
cg00000109 0.8213575
cg00000165 0.3758337
cg00000236 0.7260492
cg00000289 0.409112
cg00000292 0.6832276
cg00000321 0.199589
cg00000363 0.1255011
cg00000622 0.01772767
cg00000658 0.808645
cg00000714 0.06292538
cg00000721 0.9009216
cg00000734 0.06663487
cg00000769 0.03480149
cg00000807 0.8772446
cg00000884 0.7944793
cg00000905 0.1208613
cg00000924 0.7104247
cg00000948 0.9089356

Total number of rows: 485577

Table truncated, full table size 10040 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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