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Sample GSM1573034 Query DataSets for GSM1573034
Status Public on Jun 03, 2015
Title CRBM of subject 131 (Sample194)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 131
Sex: F
predicted gender: female
age: 111
dna methylation age: 58.9068491939529
age acceleration with respect to noncerebellar samples: -24.4102502449788
cor sample vs gold standard: 0.834046749286479
mean abs difference sample vs gold standard: 0.0994283986503592
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.6170928
cg00000108 0.491091
cg00000109 0.7753768
cg00000165 0.4534413
cg00000236 0.7337214
cg00000289 0.5950653
cg00000292 0.6917953
cg00000321 0.2618005
cg00000363 0.09296522
cg00000622 0.01697673
cg00000658 0.8426219
cg00000714 0.0678656
cg00000721 0.9009677
cg00000734 0.07358649
cg00000769 0.0394374
cg00000807 0.8967875
cg00000884 0.7574787
cg00000905 0.1009877
cg00000924 0.7000472
cg00000948 0.9033088

Total number of rows: 485577

Table truncated, full table size 10043 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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