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Sample GSM1573033 Query DataSets for GSM1573033
Status Public on Jun 03, 2015
Title Temporal of subject 299 (Sample193)
Sample type genomic
 
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 299
Sex: F
predicted gender: female
age: 101
dna methylation age: 67.4285126209755
age acceleration with respect to noncerebellar samples: -9.33345442376573
cor sample vs gold standard: 0.892572906824867
mean abs difference sample vs gold standard: 0.0872548865956499
postmortem interval: 28
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4379027
cg00000108 0.9053345
cg00000109 0.6559643
cg00000165 0.2213622
cg00000236 0.7669106
cg00000289 0.5
cg00000292 0.7155263
cg00000321 0.5714968
cg00000363 0.1449984
cg00000622 0.0145942
cg00000658 0.8203593
cg00000714 0.09649547
cg00000721 0.877979
cg00000734 0.05691208
cg00000769 0.03843488
cg00000807 0.8565114
cg00000884 0.7944471
cg00000905 0.0960523
cg00000924 0.6270402
cg00000948 0.8929057

Total number of rows: 485577

Table truncated, full table size 10026 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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