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Sample GSM1573026 Query DataSets for GSM1573026
Status Public on Jun 03, 2015
Title Frontal of subject 165 (Sample186)
Sample type genomic
 
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 165
Sex: M
predicted gender: male
age: 100
dna methylation age: 66.8854494359308
age acceleration with respect to noncerebellar samples: -9.22100436939137
cor sample vs gold standard: 0.891938726850302
mean abs difference sample vs gold standard: 0.0972498751363687
postmortem interval: 52
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.393485
cg00000108 0.8904321
cg00000109 0.6857072
cg00000165 0.1829676
cg00000236 0.769357
cg00000289 0.4756447
cg00000292 0.7209598
cg00000321 0.459
cg00000363 0.1879509
cg00000622 0.03105032
cg00000658 0.8062201
cg00000714 0.08501069
cg00000721 0.8685688
cg00000734 0.09143763
cg00000769 0.06493154
cg00000807 0.8910284
cg00000884 0.7724957
cg00000905 0.1063647
cg00000924 0.7382889
cg00000948 0.9254386

Total number of rows: 485577

Table truncated, full table size 9997 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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