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Sample GSM1573025 Query DataSets for GSM1573025
Status Public on Jun 03, 2015
Title Parietal of subject 71 (Sample185)
Sample type genomic
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 71
Sex: M
predicted gender: male
age: 53
dna methylation age: 39.0529934660327
age acceleration with respect to noncerebellar samples: -6.24433808659409
cor sample vs gold standard: 0.88915346602332
mean abs difference sample vs gold standard: 0.0920212567754061
postmortem interval: 16.5
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5072131
cg00000108 0.9098892
cg00000109 0.7719571
cg00000165 0.2071024
cg00000236 0.7869502
cg00000289 0.6203496
cg00000292 0.7171372
cg00000321 0.4752527
cg00000363 0.2040359
cg00000622 0.03097298
cg00000658 0.8117917
cg00000714 0.1143339
cg00000721 0.9281292
cg00000734 0.0705812
cg00000769 0.05399043
cg00000807 0.9040958
cg00000884 0.8241884
cg00000905 0.1387632
cg00000924 0.6757467
cg00000948 0.911374

Total number of rows: 485577

Table truncated, full table size 10026 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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