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Sample GSM1573024 Query DataSets for GSM1573024
Status Public on Jun 03, 2015
Title Caudate Nucleus of subject 437 (Sample184)
Sample type genomic
Source name Brain Caudate Nucleus
Organism Homo sapiens
Characteristics tissue: Brain Caudate Nucleus
subject id: 437
Sex: F
predicted gender: female
age: 36
dna methylation age: 31.1171206571904
age acceleration with respect to noncerebellar samples: -3.03648582531254
cor sample vs gold standard: 0.892671465642453
mean abs difference sample vs gold standard: 0.0839341251579754
postmortem interval: 11
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3666784
cg00000108 0.8527319
cg00000109 0.6601467
cg00000165 0.1801057
cg00000236 0.7801278
cg00000289 0.4333695
cg00000292 0.694324
cg00000321 0.4430837
cg00000363 0.1644504
cg00000622 0.02021939
cg00000658 0.8006119
cg00000714 0.1133939
cg00000721 0.8751329
cg00000734 0.07403179
cg00000769 0.05738084
cg00000807 0.8802345
cg00000884 0.8322945
cg00000905 0.07892004
cg00000924 0.588581
cg00000948 0.909244

Total number of rows: 485577

Table truncated, full table size 10028 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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