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Sample GSM1573023 Query DataSets for GSM1573023
Status Public on Jun 03, 2015
Title Hippocampus of subject 379 (Sample183)
Sample type genomic
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 379
Sex: F
predicted gender: female
age: 96
dna methylation age: 72.9774791896126
age acceleration with respect to noncerebellar samples: -0.506921658033363
cor sample vs gold standard: 0.911171428044065
mean abs difference sample vs gold standard: 0.0785422707202283
postmortem interval: NA
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5475331
cg00000108 0.8840874
cg00000109 0.6723672
cg00000165 0.2057342
cg00000236 0.7811119
cg00000289 0.4578627
cg00000292 0.6318099
cg00000321 0.435012
cg00000363 0.1488304
cg00000622 0.01235116
cg00000658 0.8454159
cg00000714 0.09722374
cg00000721 0.8919798
cg00000734 0.05918823
cg00000769 0.03854914
cg00000807 0.8649614
cg00000884 0.7663897
cg00000905 0.08937137
cg00000924 0.6028123
cg00000948 0.9137767

Total number of rows: 485577

Table truncated, full table size 10029 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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