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Sample GSM1573016 Query DataSets for GSM1573016
Status Public on Jun 03, 2015
Title Occipital of subject 254 (Sample176)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 254
Sex: F
predicted gender: female
age: 93
dna methylation age: 67.7127084419703
age acceleration with respect to noncerebellar samples: -3.80515268741851
cor sample vs gold standard: 0.899122704656095
mean abs difference sample vs gold standard: 0.0823695390919072
postmortem interval: 4
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.431533
cg00000108 0.9187681
cg00000109 0.7639697
cg00000165 0.1370492
cg00000236 0.8117594
cg00000289 0.5734832
cg00000292 0.6459406
cg00000321 0.4922273
cg00000363 0.1414721
cg00000622 0.01767698
cg00000658 0.7819428
cg00000714 0.08265802
cg00000721 0.8925322
cg00000734 0.06055579
cg00000769 0.04029897
cg00000807 0.891051
cg00000884 0.7747614
cg00000905 0.06854605
cg00000924 0.637628
cg00000948 0.8968825

Total number of rows: 485577

Table truncated, full table size 10038 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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