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Sample GSM1573015 Query DataSets for GSM1573015
Status Public on Jun 03, 2015
Title CRBM of subject 165 (Sample175)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 165
Sex: M
predicted gender: male
age: 100
dna methylation age: 61.8618540931669
age acceleration with respect to noncerebellar samples: -14.2445997121553
cor sample vs gold standard: 0.830211499217304
mean abs difference sample vs gold standard: 0.101730886803541
postmortem interval: 52
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.6146331
cg00000108 0.5942298
cg00000109 0.8436762
cg00000165 0.3945876
cg00000236 0.6970538
cg00000289 0.4899635
cg00000292 0.5868842
cg00000321 0.1819288
cg00000363 0.09733457
cg00000622 0.01725358
cg00000658 0.8105762
cg00000714 0.0627818
cg00000721 0.8974325
cg00000734 0.07470793
cg00000769 0.04733416
cg00000807 0.92093
cg00000884 0.7808197
cg00000905 0.09211457
cg00000924 0.6177977
cg00000948 0.9048619

Total number of rows: 485577

Table truncated, full table size 10056 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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