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Sample GSM1573006 Query DataSets for GSM1573006
Status Public on Jun 03, 2015
Title Parietal of subject 467 (Sample166)
Sample type genomic
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 467
Sex: M
predicted gender: male
age: 41
dna methylation age: 29.7248179466344
age acceleration with respect to noncerebellar samples: -7.70635473296378
cor sample vs gold standard: 0.890922124873497
mean abs difference sample vs gold standard: 0.0900024319316905
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4894098
cg00000108 0.8367066
cg00000109 0.7114064
cg00000165 0.2204824
cg00000236 0.751634
cg00000289 0.4125
cg00000292 0.7294279
cg00000321 0.4952737
cg00000363 0.1607178
cg00000622 0.02255639
cg00000658 0.8008765
cg00000714 0.1215912
cg00000721 0.8703982
cg00000734 0.05851558
cg00000769 0.04159039
cg00000807 0.8862333
cg00000884 0.7607753
cg00000905 0.1284548
cg00000924 0.6259099
cg00000948 0.8937036

Total number of rows: 485577

Table truncated, full table size 10016 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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