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Sample GSM1573004 Query DataSets for GSM1573004
Status Public on Jun 03, 2015
Title Frontal of subject 315 (Sample164)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 315
Sex: F
predicted gender: female
age: 63
dna methylation age: 49.64318368886
age acceleration with respect to noncerebellar samples: -2.2092802579573
cor sample vs gold standard: 0.886428661028989
mean abs difference sample vs gold standard: 0.0889959680008429
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5116205
cg00000108 0.8878798
cg00000109 0.7098376
cg00000165 0.2358263
cg00000236 0.8031342
cg00000289 0.5748503
cg00000292 0.6879237
cg00000321 0.5376961
cg00000363 0.1548255
cg00000622 0.02337236
cg00000658 0.8119827
cg00000714 0.1422693
cg00000721 0.9050323
cg00000734 0.07596685
cg00000769 0.03803648
cg00000807 0.908887
cg00000884 0.7919611
cg00000905 0.1058187
cg00000924 0.6921249
cg00000948 0.9296091

Total number of rows: 485577

Table truncated, full table size 10022 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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