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Sample GSM1573003 Query DataSets for GSM1573003
Status Public on Jun 03, 2015
Title Cingulate Gyrus of subject 283 (Sample163)
Sample type genomic
Source name Brain Cingulate Gyrus
Organism Homo sapiens
Characteristics tissue: Brain Cingulate Gyrus
subject id: 283
Sex: M
predicted gender: male
age: 32
dna methylation age: 24.3033201843611
age acceleration with respect to noncerebellar samples: -7.22823334046563
cor sample vs gold standard: 0.895834152002701
mean abs difference sample vs gold standard: 0.0867978341506841
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5002983
cg00000108 0.8510104
cg00000109 0.6777159
cg00000165 0.194402
cg00000236 0.7925867
cg00000289 0.4736298
cg00000292 0.7739283
cg00000321 0.4080786
cg00000363 0.2166465
cg00000622 0.02803859
cg00000658 0.8235821
cg00000714 0.1092504
cg00000721 0.8795227
cg00000734 0.06594331
cg00000769 0.04082852
cg00000807 0.8673951
cg00000884 0.7384931
cg00000905 0.1442753
cg00000924 0.6506677
cg00000948 0.9189001

Total number of rows: 485577

Table truncated, full table size 10022 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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