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Sample GSM1572999 Query DataSets for GSM1572999
Status Public on Jun 03, 2015
Title CRBM of subject 131 (Sample159)
Sample type genomic
 
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 131
Sex: F
predicted gender: female
age: 111
dna methylation age: 62.2044552956977
age acceleration with respect to noncerebellar samples: -21.112644143234
cor sample vs gold standard: 0.826876653361815
mean abs difference sample vs gold standard: 0.099851321194496
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.5669389
cg00000108 0.4366377
cg00000109 0.7945384
cg00000165 0.4311566
cg00000236 0.7254558
cg00000289 0.3584989
cg00000292 0.6875913
cg00000321 0.2284866
cg00000363 0.07737647
cg00000622 0.02037813
cg00000658 0.7949347
cg00000714 0.06182569
cg00000721 0.8562081
cg00000734 0.06275292
cg00000769 0.03646539
cg00000807 0.8607161
cg00000884 0.7289904
cg00000905 0.07425845
cg00000924 0.5952168
cg00000948 0.8967884

Total number of rows: 485577

Table truncated, full table size 10055 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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