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Sample GSM1572997 Query DataSets for GSM1572997
Status Public on Jun 03, 2015
Title CRBM of subject 487 (Sample157)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 487
Sex: F
predicted gender: female
age: 112
dna methylation age: 64.5635067250229
age acceleration with respect to noncerebellar samples: -19.4091059533279
cor sample vs gold standard: 0.825538983778119
mean abs difference sample vs gold standard: 0.100319910930579
postmortem interval: NA
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5864583
cg00000108 0.825439
cg00000109 0.8015893
cg00000165 0.2448691
cg00000236 0.6767196
cg00000289 0.3699248
cg00000292 0.5442395
cg00000321 0.2033355
cg00000363 0.1101357
cg00000622 0.01196229
cg00000658 0.7987317
cg00000714 0.04613443
cg00000721 0.8938018
cg00000734 0.05928546
cg00000769 0.03524899
cg00000807 0.9081963
cg00000884 0.7604686
cg00000905 0.06237308
cg00000924 0.5851762
cg00000948 0.8994124

Total number of rows: 485577

Table truncated, full table size 10061 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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