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Sample GSM1572993 Query DataSets for GSM1572993
Status Public on Jun 03, 2015
Title Frontal of subject 71 (Sample153)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 71
Sex: M
predicted gender: male
age: 53
dna methylation age: 49.9177300841752
age acceleration with respect to noncerebellar samples: 4.6203985315484
cor sample vs gold standard: 0.887637575336969
mean abs difference sample vs gold standard: 0.0847340029606131
postmortem interval: 16.5
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5136909
cg00000108 0.8901631
cg00000109 0.6883228
cg00000165 0.160331
cg00000236 0.8188292
cg00000289 0.5925926
cg00000292 0.6169606
cg00000321 0.4480695
cg00000363 0.1114637
cg00000622 0.02087524
cg00000658 0.7928355
cg00000714 0.1224973
cg00000721 0.8419862
cg00000734 0.05557137
cg00000769 0.06050675
cg00000807 0.8836824
cg00000884 0.7712207
cg00000905 0.07095068
cg00000924 0.5675372
cg00000948 0.8944908

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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