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Sample GSM1572992 Query DataSets for GSM1572992
Status Public on Jun 03, 2015
Title Sensory Cortex of subject 437 (Sample152)
Sample type genomic
Source name Brain Sensory Cortex
Organism Homo sapiens
Characteristics tissue: Brain Sensory Cortex
subject id: 437
Sex: F
predicted gender: female
age: 36
dna methylation age: 36.5358388388245
age acceleration with respect to noncerebellar samples: 2.38223235632157
cor sample vs gold standard: 0.886664892075101
mean abs difference sample vs gold standard: 0.086806128785329
postmortem interval: 11
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4650613
cg00000108 0.9191377
cg00000109 0.7288259
cg00000165 0.1703704
cg00000236 0.7365496
cg00000289 0.530541
cg00000292 0.7353572
cg00000321 0.459244
cg00000363 0.1415473
cg00000622 0.01996205
cg00000658 0.8302354
cg00000714 0.105182
cg00000721 0.8714632
cg00000734 0.05820515
cg00000769 0.05326724
cg00000807 0.9077632
cg00000884 0.7454469
cg00000905 0.09021407
cg00000924 0.6441187
cg00000948 0.9304792

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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