|
Status |
Public on Jun 03, 2015 |
Title |
Sensory Cortex of subject 437 (Sample152) |
Sample type |
genomic |
|
|
Source name |
Brain Sensory Cortex
|
Organism |
Homo sapiens |
Characteristics |
tissue: Brain Sensory Cortex subject id: 437 Sex: F predicted gender: female age: 36 dna methylation age: 36.5358388388245 age acceleration with respect to noncerebellar samples: 2.38223235632157 cor sample vs gold standard: 0.886664892075101 mean abs difference sample vs gold standard: 0.086806128785329 postmortem interval: 11
|
Growth protocol |
DNA extracted from fresh frozen tissue
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
|
Label |
Cy3 and Cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Data processing |
BeadStudio software v3.2. Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
|
|
|
Submission date |
Dec 24, 2014 |
Last update date |
Jun 03, 2015 |
Contact name |
Steve Horvath |
E-mail(s) |
shorvath@altoslabs.com
|
Organization name |
University of California, Los Angeles
|
Department |
Human Genetics
|
Lab |
Horvath
|
Street address |
695 Charles E. Young Drive South, Box 708822
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90095-7088 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE64509 |
DNA methylation profiles of human brain tissue samples |
GSE64511 |
DNA methylation profiles of multiple human tissues |
|