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Sample GSM1572991 Query DataSets for GSM1572991
Status Public on Jun 03, 2015
Title Temporal of subject 379 (Sample151)
Sample type genomic
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 379
Sex: F
predicted gender: female
age: 96
dna methylation age: 74.624452567678
age acceleration with respect to noncerebellar samples: 1.14005172003205
cor sample vs gold standard: 0.901638614791567
mean abs difference sample vs gold standard: 0.0812466455025944
postmortem interval: NA
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4159925
cg00000108 0.8621582
cg00000109 0.7637997
cg00000165 0.1623677
cg00000236 0.7585706
cg00000289 0.5123518
cg00000292 0.6660883
cg00000321 0.4427234
cg00000363 0.1080369
cg00000622 0.02752078
cg00000658 0.7956054
cg00000714 0.07054292
cg00000721 0.9168264
cg00000734 0.03887932
cg00000769 0.05479452
cg00000807 0.8983246
cg00000884 0.8098896
cg00000905 0.05918296
cg00000924 0.56767
cg00000948 0.879852

Total number of rows: 485577

Table truncated, full table size 10038 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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