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Sample GSM1572990 Query DataSets for GSM1572990
Status Public on Jun 03, 2015
Title Frontal of subject 502 (Sample150)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 502
Sex: F
predicted gender: female
age: 85
dna methylation age: 64.5843801985726
age acceleration with respect to noncerebellar samples: -1.68937501546381
cor sample vs gold standard: 0.892280849011623
mean abs difference sample vs gold standard: 0.0824110161791571
postmortem interval: 22
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4013388
cg00000108 0.8222166
cg00000109 0.6815831
cg00000165 0.1362205
cg00000236 0.8144647
cg00000289 0.4475839
cg00000292 0.6756513
cg00000321 0.4233425
cg00000363 0.0966978
cg00000622 0.02377247
cg00000658 0.7770489
cg00000714 0.08634223
cg00000721 0.8668216
cg00000734 0.03843774
cg00000769 0.05542462
cg00000807 0.8688379
cg00000884 0.7200324
cg00000905 0.07530612
cg00000924 0.5474672
cg00000948 0.9036981

Total number of rows: 485577

Table truncated, full table size 10035 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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