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Sample GSM1572988 Query DataSets for GSM1572988
Status Public on Jun 03, 2015
Title Frontal of subject 87 (Sample148)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 87
Sex: M
predicted gender: male
age: 64
dna methylation age: 52.8906151853642
age acceleration with respect to noncerebellar samples: 0.382637999127851
cor sample vs gold standard: 0.888407719082429
mean abs difference sample vs gold standard: 0.0854642214289418
postmortem interval: 7
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.470731
cg00000108 0.9178582
cg00000109 0.655969
cg00000165 0.1595939
cg00000236 0.8104935
cg00000289 0.4861428
cg00000292 0.6657961
cg00000321 0.4978925
cg00000363 0.1610357
cg00000622 0.02598965
cg00000658 0.8130686
cg00000714 0.0955086
cg00000721 0.8865526
cg00000734 0.06763642
cg00000769 0.05338699
cg00000807 0.9185624
cg00000884 0.8122232
cg00000905 0.1061246
cg00000924 0.608657
cg00000948 0.903918

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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