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Sample GSM1572987 Query DataSets for GSM1572987
Status Public on Jun 03, 2015
Title Parietal of subject 71 (Sample147)
Sample type genomic
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 71
Sex: M
predicted gender: male
age: 53
dna methylation age: 44.1606379595161
age acceleration with respect to noncerebellar samples: -1.13669359311069
cor sample vs gold standard: 0.882796291564896
mean abs difference sample vs gold standard: 0.0850398109765888
postmortem interval: 16.5
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.43712
cg00000108 0.9216282
cg00000109 0.7130368
cg00000165 0.142408
cg00000236 0.7501129
cg00000289 0.5086876
cg00000292 0.668544
cg00000321 0.4456847
cg00000363 0.1160529
cg00000622 0.0217233
cg00000658 0.7944651
cg00000714 0.07904603
cg00000721 0.869611
cg00000734 0.05828387
cg00000769 0.05480614
cg00000807 0.9104114
cg00000884 0.7865312
cg00000905 0.08573898
cg00000924 0.5620159
cg00000948 0.9011356

Total number of rows: 485577

Table truncated, full table size 10044 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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