GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1572983 Query DataSets for GSM1572983
Status Public on Jun 03, 2015
Title Parietal of subject 87 (Sample143)
Sample type genomic
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 87
Sex: M
predicted gender: male
age: 64
dna methylation age: 52.1366557205794
age acceleration with respect to noncerebellar samples: -0.371321465656948
cor sample vs gold standard: 0.886026135046872
mean abs difference sample vs gold standard: 0.0869679718702736
postmortem interval: 7
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4327441
cg00000108 0.9202815
cg00000109 0.7387297
cg00000165 0.1501193
cg00000236 0.7794019
cg00000289 0.4990291
cg00000292 0.6641925
cg00000321 0.5650868
cg00000363 0.1409411
cg00000622 0.02785558
cg00000658 0.8142329
cg00000714 0.09692635
cg00000721 0.8679328
cg00000734 0.06131924
cg00000769 0.06526173
cg00000807 0.8837255
cg00000884 0.8308316
cg00000905 0.08058058
cg00000924 0.618084
cg00000948 0.9419448

Total number of rows: 485577

Table truncated, full table size 10039 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap