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Sample GSM1572982 Query DataSets for GSM1572982
Status Public on Jun 03, 2015
Title Temporal of subject 165 (Sample142)
Sample type genomic
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 165
Sex: M
predicted gender: male
age: 100
dna methylation age: 74.0649704517324
age acceleration with respect to noncerebellar samples: -2.04148335358975
cor sample vs gold standard: 0.903524263027955
mean abs difference sample vs gold standard: 0.0823206433426263
postmortem interval: 52
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4049614
cg00000108 0.921615
cg00000109 0.7682316
cg00000165 0.1915975
cg00000236 0.7891664
cg00000289 0.4737456
cg00000292 0.7241534
cg00000321 0.4661765
cg00000363 0.1173278
cg00000622 0.01729107
cg00000658 0.7964989
cg00000714 0.09639792
cg00000721 0.8947089
cg00000734 0.0540604
cg00000769 0.05834005
cg00000807 0.8727786
cg00000884 0.8534848
cg00000905 0.0754782
cg00000924 0.6033347
cg00000948 0.8937961

Total number of rows: 485577

Table truncated, full table size 10038 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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