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Sample GSM1572981 Query DataSets for GSM1572981
Status Public on Jun 03, 2015
Title Temporal of subject 339 (Sample141)
Sample type genomic
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 339
Sex: F
predicted gender: female
age: 80
dna methylation age: 69.402347200943
age acceleration with respect to noncerebellar samples: 6.40615818400185
cor sample vs gold standard: 0.890819275232607
mean abs difference sample vs gold standard: 0.0850916786243807
postmortem interval: 10
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4586307
cg00000108 0.9353986
cg00000109 0.8046791
cg00000165 0.1866901
cg00000236 0.8558834
cg00000289 0.5152428
cg00000292 0.6575465
cg00000321 0.5247766
cg00000363 0.1087275
cg00000622 0.03293179
cg00000658 0.8327124
cg00000714 0.09303876
cg00000721 0.8509381
cg00000734 0.03567832
cg00000769 0.06267847
cg00000807 0.8980293
cg00000884 0.8233628
cg00000905 0.05664313
cg00000924 0.6251433
cg00000948 0.9139935

Total number of rows: 485577

Table truncated, full table size 10039 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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