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Sample GSM1572980 Query DataSets for GSM1572980
Status Public on Jun 03, 2015
Title Occipital of subject 299 (Sample140)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 299
Sex: F
predicted gender: female
age: 101
dna methylation age: 70.7957837903063
age acceleration with respect to noncerebellar samples: -5.96618325443492
cor sample vs gold standard: 0.889242698535048
mean abs difference sample vs gold standard: 0.0850996577580521
postmortem interval: 28
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4215651
cg00000108 0.9055461
cg00000109 0.7238888
cg00000165 0.1590857
cg00000236 0.7845641
cg00000289 0.4915995
cg00000292 0.697519
cg00000321 0.4969258
cg00000363 0.09928011
cg00000622 0.03390199
cg00000658 0.7706079
cg00000714 0.07522734
cg00000721 0.9020904
cg00000734 0.04708266
cg00000769 0.06148867
cg00000807 0.9051796
cg00000884 0.8290283
cg00000905 0.0687048
cg00000924 0.6208892
cg00000948 0.9303069

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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