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Sample GSM1572979 Query DataSets for GSM1572979
Status Public on Jun 03, 2015
Title Occipital of subject 165 (Sample139)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 165
Sex: M
predicted gender: male
age: 100
dna methylation age: 73.6582161920824
age acceleration with respect to noncerebellar samples: -2.44823761323975
cor sample vs gold standard: 0.88598724308092
mean abs difference sample vs gold standard: 0.0860514196242945
postmortem interval: 52
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4182641
cg00000108 0.9086731
cg00000109 0.7595231
cg00000165 0.1099366
cg00000236 0.7755845
cg00000289 0.5398265
cg00000292 0.7057823
cg00000321 0.4776322
cg00000363 0.09663457
cg00000622 0.01626758
cg00000658 0.7892464
cg00000714 0.1136721
cg00000721 0.878989
cg00000734 0.04550767
cg00000769 0.06328326
cg00000807 0.9003725
cg00000884 0.7953092
cg00000905 0.07693751
cg00000924 0.6458316
cg00000948 0.9153615

Total number of rows: 485577

Table truncated, full table size 10043 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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