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Sample GSM1572978 Query DataSets for GSM1572978
Status Public on Jun 03, 2015
Title Caudate Nucleus of subject 393 (Sample138)
Sample type genomic
Source name Brain Caudate Nucleus
Organism Homo sapiens
Characteristics tissue: Brain Caudate Nucleus
subject id: 393
Sex: M
predicted gender: male
age: 73
dna methylation age: 47.1845676543623
age acceleration with respect to noncerebellar samples: -11.2230286866455
cor sample vs gold standard: 0.893484196772322
mean abs difference sample vs gold standard: 0.082521557107709
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4022077
cg00000108 0.9069241
cg00000109 0.681198
cg00000165 0.1625843
cg00000236 0.8204073
cg00000289 0.5243853
cg00000292 0.6617726
cg00000321 0.5037147
cg00000363 0.09027237
cg00000622 0.009668329
cg00000658 0.8023165
cg00000714 0.1236919
cg00000721 0.8924149
cg00000734 0.05116153
cg00000769 0.04878287
cg00000807 0.8922726
cg00000884 0.8124388
cg00000905 0.04045307
cg00000924 0.6023071
cg00000948 0.917738

Total number of rows: 485577

Table truncated, full table size 10050 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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