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Sample GSM1572977 Query DataSets for GSM1572977
Status Public on Jun 03, 2015
Title Visual Cortex of subject 283 (Sample137)
Sample type genomic
Source name Brain Visual Cortex
Organism Homo sapiens
Characteristics tissue: Brain Visual Cortex
subject id: 283
Sex: M
predicted gender: male
age: 32
dna methylation age: 27.9248138238728
age acceleration with respect to noncerebellar samples: -3.60673970095393
cor sample vs gold standard: 0.882825647074359
mean abs difference sample vs gold standard: 0.0855340901791293
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4299543
cg00000108 0.9236349
cg00000109 0.7374626
cg00000165 0.1335439
cg00000236 0.7400687
cg00000289 0.4531078
cg00000292 0.699187
cg00000321 0.4263267
cg00000363 0.09929407
cg00000622 0.02508422
cg00000658 0.7572968
cg00000714 0.07391214
cg00000721 0.9016486
cg00000734 0.05589475
cg00000769 0.06213898
cg00000807 0.9089264
cg00000884 0.8132898
cg00000905 0.0595436
cg00000924 0.5852029
cg00000948 0.9154965

Total number of rows: 485577

Table truncated, full table size 10050 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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