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Sample GSM1572974 Query DataSets for GSM1572974
Status Public on Jun 03, 2015
Title Visual Cortex of subject 87 (Sample134)
Sample type genomic
Source name Brain Visual Cortex
Organism Homo sapiens
Characteristics tissue: Brain Visual Cortex
subject id: 87
Sex: M
predicted gender: male
age: 64
dna methylation age: 53.9818640969127
age acceleration with respect to noncerebellar samples: 1.47388691067636
cor sample vs gold standard: 0.886856281636661
mean abs difference sample vs gold standard: 0.0881840602799624
postmortem interval: 7
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4747317
cg00000108 0.8836958
cg00000109 0.7237844
cg00000165 0.1666667
cg00000236 0.7858903
cg00000289 0.5942549
cg00000292 0.6772234
cg00000321 0.5273813
cg00000363 0.1434924
cg00000622 0.02107362
cg00000658 0.78989
cg00000714 0.1131678
cg00000721 0.886358
cg00000734 0.07142318
cg00000769 0.07326487
cg00000807 0.8984918
cg00000884 0.8166369
cg00000905 0.08855737
cg00000924 0.6629057
cg00000948 0.8996062

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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