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Sample GSM1572973 Query DataSets for GSM1572973
Status Public on Jun 03, 2015
Title Frontal of subject 339 (Sample133)
Sample type genomic
 
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 339
Sex: F
predicted gender: female
age: 80
dna methylation age: 59.7398000924408
age acceleration with respect to noncerebellar samples: -3.25638892450035
cor sample vs gold standard: 0.886018754093104
mean abs difference sample vs gold standard: 0.0877553196306297
postmortem interval: 10
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.5286216
cg00000108 0.9090909
cg00000109 0.7500394
cg00000165 0.1469447
cg00000236 0.8233835
cg00000289 0.6133482
cg00000292 0.709891
cg00000321 0.4629244
cg00000363 0.167616
cg00000622 0.02166498
cg00000658 0.7959205
cg00000714 0.1307093
cg00000721 0.9027435
cg00000734 0.0657938
cg00000769 0.06606375
cg00000807 0.9112423
cg00000884 0.7488585
cg00000905 0.08564631
cg00000924 0.6288205
cg00000948 0.9231563

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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