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Sample GSM1572972 Query DataSets for GSM1572972
Status Public on Jun 03, 2015
Title Frontal of subject 393 (Sample132)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 393
Sex: M
predicted gender: male
age: 73
dna methylation age: 53.8071403564895
age acceleration with respect to noncerebellar samples: -4.60045598451831
cor sample vs gold standard: 0.888977155767525
mean abs difference sample vs gold standard: 0.085680369809541
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3691734
cg00000108 0.9095637
cg00000109 0.7556762
cg00000165 0.1144107
cg00000236 0.7754939
cg00000289 0.5782848
cg00000292 0.6791448
cg00000321 0.5338646
cg00000363 0.1364762
cg00000622 0.01728898
cg00000658 0.7920609
cg00000714 0.08031539
cg00000721 0.8626466
cg00000734 0.056504
cg00000769 0.0628607
cg00000807 0.8802528
cg00000884 0.8201754
cg00000905 0.07797948
cg00000924 0.5980606
cg00000948 0.9329225

Total number of rows: 485577

Table truncated, full table size 10045 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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