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Sample GSM1572971 Query DataSets for GSM1572971
Status Public on Jun 03, 2015
Title Frontal of subject 467 (Sample131)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 467
Sex: M
predicted gender: male
age: 41
dna methylation age: 35.4204976802468
age acceleration with respect to noncerebellar samples: -2.01067499935139
cor sample vs gold standard: 0.885454378407172
mean abs difference sample vs gold standard: 0.0855615711862623
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4691129
cg00000108 0.9025002
cg00000109 0.7057325
cg00000165 0.1407868
cg00000236 0.8057971
cg00000289 0.5208845
cg00000292 0.6503472
cg00000321 0.4998284
cg00000363 0.1902911
cg00000622 0.01958736
cg00000658 0.7788692
cg00000714 0.1036016
cg00000721 0.8645959
cg00000734 0.05631213
cg00000769 0.07969265
cg00000807 0.9107793
cg00000884 0.7630622
cg00000905 0.06130835
cg00000924 0.5854018
cg00000948 0.8895571

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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