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Sample GSM1572970 Query DataSets for GSM1572970
Status Public on Jun 03, 2015
Title CRBM of subject 45 (Sample130)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 45
Sex: M
predicted gender: male
age: 53
dna methylation age: 42.3053015374678
age acceleration with respect to noncerebellar samples: -2.992030015159
cor sample vs gold standard: 0.851886878739183
mean abs difference sample vs gold standard: 0.0943787080721287
postmortem interval: 23
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.56783
cg00000108 0.56937
cg00000109 0.7960279
cg00000165 0.3358254
cg00000236 0.6976609
cg00000289 0.4846004
cg00000292 0.5996938
cg00000321 0.1892155
cg00000363 0.09885006
cg00000622 0.02043344
cg00000658 0.7627568
cg00000714 0.06348316
cg00000721 0.8824291
cg00000734 0.05414225
cg00000769 0.06185649
cg00000807 0.8778314
cg00000884 0.8037264
cg00000905 0.0742212
cg00000924 0.638408
cg00000948 0.8823861

Total number of rows: 485577

Table truncated, full table size 10052 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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