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Sample GSM1572969 Query DataSets for GSM1572969
Status Public on Jun 03, 2015
Title Hippocampus of subject 204 (Sample129)
Sample type genomic
 
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 204
Sex: F
predicted gender: female
age: 53
dna methylation age: 46.8258145156635
age acceleration with respect to noncerebellar samples: 1.52848296303671
cor sample vs gold standard: 0.897802226247085
mean abs difference sample vs gold standard: 0.0814268743706589
postmortem interval: 12
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4786285
cg00000108 0.8922458
cg00000109 0.7078425
cg00000165 0.2030075
cg00000236 0.8447929
cg00000289 0.5423883
cg00000292 0.6427343
cg00000321 0.4189252
cg00000363 0.1668229
cg00000622 0.01378129
cg00000658 0.8012281
cg00000714 0.1032852
cg00000721 0.8455375
cg00000734 0.06686312
cg00000769 0.04864174
cg00000807 0.8761165
cg00000884 0.7620222
cg00000905 0.07385633
cg00000924 0.6379698
cg00000948 0.9024829

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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