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Sample GSM1572968 Query DataSets for GSM1572968
Status Public on Jun 03, 2015
Title CRBM of subject 448 (Sample128)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 448
Sex: M
predicted gender: male
age: 85
dna methylation age: 53.6244769231651
age acceleration with respect to noncerebellar samples: -12.6492782908713
cor sample vs gold standard: 0.836631529085048
mean abs difference sample vs gold standard: 0.0976103561501273
postmortem interval: 36
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5648457
cg00000108 0.5408216
cg00000109 0.8392515
cg00000165 0.1509746
cg00000236 0.7356375
cg00000289 0.4191047
cg00000292 0.6018797
cg00000321 0.2098414
cg00000363 0.07940096
cg00000622 0.02393609
cg00000658 0.8131751
cg00000714 0.05483765
cg00000721 0.8757982
cg00000734 0.06497876
cg00000769 0.04977675
cg00000807 0.9102385
cg00000884 0.7643549
cg00000905 0.0939322
cg00000924 0.7159556
cg00000948 0.924112

Total number of rows: 485577

Table truncated, full table size 10055 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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