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Sample GSM1572967 Query DataSets for GSM1572967
Status Public on Jun 03, 2015
Title Frontal of subject 328 (Sample127)
Sample type genomic
 
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 328
Sex: F
predicted gender: female
age: 59
dna methylation age: 47.4581593026561
age acceleration with respect to noncerebellar samples: -1.77225168648499
cor sample vs gold standard: 0.898640917932593
mean abs difference sample vs gold standard: 0.0819862676954251
postmortem interval: 20
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4409938
cg00000108 0.9028444
cg00000109 0.8017359
cg00000165 0.1542006
cg00000236 0.8071127
cg00000289 0.5808432
cg00000292 0.7004717
cg00000321 0.4940415
cg00000363 0.114752
cg00000622 0.01766653
cg00000658 0.7813609
cg00000714 0.07939564
cg00000721 0.8956333
cg00000734 0.0507155
cg00000769 0.0427945
cg00000807 0.9200792
cg00000884 0.8053241
cg00000905 0.07512765
cg00000924 0.6698781
cg00000948 0.9140167

Total number of rows: 485577

Table truncated, full table size 10040 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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