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Sample GSM1572963 Query DataSets for GSM1572963
Status Public on Jun 03, 2015
Title CRBM of subject 328 (Sample123)
Sample type genomic
 
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 328
Sex: F
predicted gender: female
age: 59
dna methylation age: 48.5751525624402
age acceleration with respect to noncerebellar samples: -0.65525842670089
cor sample vs gold standard: 0.832086223208424
mean abs difference sample vs gold standard: 0.0989505379461987
postmortem interval: 20
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.693956
cg00000108 0.5499893
cg00000109 0.7917445
cg00000165 0.5231951
cg00000236 0.6661199
cg00000289 0.4419489
cg00000292 0.6329579
cg00000321 0.2693438
cg00000363 0.08182456
cg00000622 0.02899518
cg00000658 0.7704721
cg00000714 0.05542154
cg00000721 0.9112418
cg00000734 0.05210871
cg00000769 0.04603611
cg00000807 0.9203867
cg00000884 0.835824
cg00000905 0.06985167
cg00000924 0.6590636
cg00000948 0.874101

Total number of rows: 485577

Table truncated, full table size 10052 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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