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Sample GSM1572962 Query DataSets for GSM1572962
Status Public on Jun 03, 2015
Title CRBM of subject 299 (Sample122)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 299
Sex: F
predicted gender: female
age: 101
dna methylation age: 59.9296954292481
age acceleration with respect to noncerebellar samples: -16.8322716154931
cor sample vs gold standard: 0.82834252249868
mean abs difference sample vs gold standard: 0.100383367033853
postmortem interval: 28
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.68758
cg00000108 0.4346653
cg00000109 0.8240343
cg00000165 0.3242354
cg00000236 0.7347056
cg00000289 0.4841994
cg00000292 0.6462306
cg00000321 0.2520694
cg00000363 0.08872582
cg00000622 0.01736147
cg00000658 0.790695
cg00000714 0.05763509
cg00000721 0.8854918
cg00000734 0.06235039
cg00000769 0.04955316
cg00000807 0.8835936
cg00000884 0.7982589
cg00000905 0.06461333
cg00000924 0.6497344
cg00000948 0.8857066

Total number of rows: 485577

Table truncated, full table size 10057 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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